The traditional and most highly utilized manner of instruction in the online Certification Course focuses on training instructors to teach a pre-designed course with common features. This model limits instructional options for faculty to those which are available in the course. Faculty who are accustomed to academic freedom and autonomy may not be willing to accept this production model or this model of instruction for online certification courses, because of the limitations that these models impose. This article explores the possibility of creating an online Certification Course which utilizes the expertise of the faculty and the techniques of brain-based learning and differentiated instruction. There is the possibility that this Organic approach to online Certification could authentically assist faculty in integrating technology into existing courses and/or new online courses at research-based institutions. Faculty members who have completed the courses to this point have made sweeping changes in their online programs and have gained confidence in online teaching and learning.