This article describes inclusive education based on gender equality, disability and social inclusion (GEDSI) in elementary schools. The research was conducted because the school work plan for inclusive education has not yet included gender equality, disability and social inclusion in elementary schools in Central Java, Indonesia. Elementary school managers still adhere to an exclusive and segregated paradigm, and they are not one hundred per cent inclusive in managing elementary schools. This impacts gender bias, injustice to children with disabilities, and the lack of social inclusion. The research used the participatory action research method through the empowerment of 20 school principals under the Educational Institution Ma'arif Nahdlatul Ulama of Central Java, Indonesia, with the stages of introduction, inculturation, team organizing, action planning, action, evaluation, and reflection. The research findings state that the inclusive education program based on GEDSI is a program prepared in the school work plan by including elements of gender justice, disability, and social inclusion in the standards of content, process, graduate competencies, educators and education personnel, facilities and infrastructure, management, financing, and assessment. The implementation of inclusive education based on GEDSI in 20 elementary schools is carried out through annual programs, semester programs and learning activities. The implementation of this program involves all stakeholders in the school, from the head to the students. Future research must explore inclusive education based on GEDSI in the curriculum and technical aspects of learning.