The issue of research within the Greek Universities pushes forward the learning and maturation procedure through action, a procedure that will change the framework of the University Community function by developing, on the basis of a rational reorganization, structural relationships with society. This study presents and analyzes the state of scientific research in the Greek university in the present unfavourable economic and social era. In this paper are analyzed inter alia, the structural malfunctions of the Greek university structures, the interaction between academic research and politics, the ethics and the good practices related to the scientific research in Greece.