Microarray is a high throughput technology to measure the gene expression. Analysis of microarray data brings many interesting and challenging problems. This thesis consists three studies related to microarray data. First, we propose a Bayesian model for microarray data and use Bayes Factors to identify differentially expressed genes. Second, we…

Correlational analyses are one of the most popular quantitative methods, yet also one of the mostly frequently misused methods in social and behavioral research, especially when analyzing ordinal data from Likert or other rating scales. Although several correlational analysis options have been developed for ordinal data, there seems to be a lack…

P. R. Killeen's (2005a) probability of replication ("p[subscript rep]") of an experimental result is the fiducial Bayesian predictive probability of finding a same-sign effect in a replication of an experiment. "p[subscript rep]" is now routinely reported in "Psychological Science" and has also begun to appear in…

The main purpose of this research is to evaluate the performance of a Bayesian approach for estimating unknown change points using Monte Carlo simulations. The univariate and bivariate unknown change point mixed models were presented and the basic idea of the Bayesian approach for estimating the models was discussed. The performance of Bayesian…

The purpose of the recently proposed "p[subscript rep]" statistic is to estimate the probability of concurrence, that is, the probability that a replicate experiment yields an effect of the same sign (Killeen, 2005a). The influential journal "Psychological Science" endorses "p[subscript rep]" and recommends its use…

This comment offers three descriptions of "p[subscript rep]" that start with a frequentist account of confidence intervals, draw on R. A. Fisher's fiducial argument, and do not make Bayesian assumptions. Links are described among "p[subscript rep]," "p" values, and the probability a confidence interval will capture…

When participants assess the relationship between two variables, each with levels of presence and absence, the two most robust phenomena are that: (a) observing the joint presence of the variables has the largest impact on judgment and observing joint absence has the smallest impact, and (b) participants' prior beliefs about the variables'…

In this paper, normal/independent distributions, including but not limited to the multivariate t distribution, the multivariate contaminated distribution, and the multivariate slash distribution, are used to develop a robust Bayesian approach for analyzing structural equation models with complete or missing data. In the context of a nonlinear…

This article demonstrates the potential of using hierarchical Bayesian methods to relate models and data in the cognitive sciences. This is done using a worked example that considers an existing model of category representation, the Varying Abstraction Model (VAM), which attempts to infer the representations people use from their behavior in…

Alternative measures of "confirmation" or "evidential support" have been proposed to express the impact of ascertaining one event on the credibility of another. We report an experiment that compares the adequacy of several such measures as descriptions of confirmation judgment in a probabilistic context.

As item response models gain increased popularity in large-scale educational and measurement testing situations, many studies have been conducted on the development and applications of unidimensional and multidimensional models. Recently, attention has been paid to IRT-based models with an overall ability dimension underlying several ability…

The laboratory component of undergraduate engineering education poses challenges in resource constrained engineering faculties. The cost, time, space and physical presence requirements of the traditional (real) laboratory approach are the contributory factors. These resource constraints may mitigate the acquisition of meaningful laboratory…

With the introduction of Information and Communication Technologies (ICT) into schools came the expectation that teachers would adopt ICT and change their practices in particular ways. Research indicates that teachers have not changed in the ways expected. Suggested in this paper is that limitations in current research methodologies documenting…

This article presents a method for computer-aided tutor evaluation: Bayesian Networks are used for organizing the collected data about tutors and for enabling accurate estimations and predictions about future tutor behavior. The model provides indications about each tutor's strengths and weaknesses, which enables the evaluator to exploit strengths…

This article reviews current methods for evaluating models in the cognitive sciences, including theoretically based approaches, such as Bayes factors and minimum description length measures; simulation approaches, including model mimicry evaluations; and practical approaches, such as validation and generalization measures. This article argues…