The present study investigated the influence of orthographic input on the recognition of second language (L2) spoken words with phonological variants, when first language (L1) and L2 have different orthographic structures. Lexical encoding for intermediate-to-advanced level Mandarin learners of Korean was assessed using masked cross-modal and within-modal priming tasks. Given that Korean has obstruent nasalization in the syllable coda, prime target pairs were created with and without such phonological variants, but spellings that were provided in the cross-modal task reflected their unaltered, nonnasalized forms. The results indicate that when L2 learners are exposed to transparent alphabetic orthography, they do not show a particular cost for spoken word recognition of L2 phonological variants as long as the variation is regular and rule-governed.